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Temporary solution: add the commons logging implementation to the VariantFiltration package. Downstream solution is described in GSA-262. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2665 348d0f76-0448-11de-a6fe-93d51630548a
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hanna 2010-01-23 01:46:18 +00:00
parent c871a0f221
commit 648a36d08e
1 changed files with 2 additions and 0 deletions
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2
packages/VariantFiltration.xml
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@ -4,6 +4,8 @@
<main-class name="org.broadinstitute.sting.gatk.CommandLineGATK" /> <main-class name="org.broadinstitute.sting.gatk.CommandLineGATK" />
<resource-bundle file="StingText.properties" /> <resource-bundle file="StingText.properties" />
<dependencies> <dependencies>
<!-- Workaround - depend on the logger impl required by JEXL -->
<package name="org.apache.commons.logging.impl" />
<!-- Variant filtration --> <!-- Variant filtration -->
<class name="org.broadinstitute.sting.gatk.walkers.filters.VariantFiltrationWalker" /> <class name="org.broadinstitute.sting.gatk.walkers.filters.VariantFiltrationWalker" />
</dependencies> </dependencies>