From 6485e8383d2cbe3ce1265d3a40e9bdda16107b6f Mon Sep 17 00:00:00 2001
From: depristo <depristo@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 27 May 2010 23:33:46 +0000
Subject: [PATCH] Trivial change to retrigger broken build that really isn't
 broken

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3453 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/gatk/walkers/indels/IndelRealigner.java               | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelRealigner.java b/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelRealigner.java
index 4a3b7e8ae..125dc0fa0 100755
--- a/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelRealigner.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelRealigner.java
@@ -519,7 +519,7 @@ public class IndelRealigner extends ReadWalker<Integer, Integer> {
                 refReads.add(read);
                 nPerfectMatches++;
                 if ( nPerfectMatches % 10000 == 0 ) {
-                    logger.debug(String.format("Perfect matching fraction: %d %d => %.2f%n", nPerfectMatches, nReadsToClean, 100.0 * nPerfectMatches / ( nReadsToClean + 1)));
+                    logger.debug(String.format("Perfect matching fraction: %d %d => %.2f", nPerfectMatches, nReadsToClean, 100.0 * nPerfectMatches / ( nReadsToClean + 1)));
                 }
 
                 continue;