diff --git a/java/src/org/broadinstitute/sting/gatk/refdata/TabularROD.java b/java/src/org/broadinstitute/sting/gatk/refdata/TabularROD.java index 5ec3e582c..70814d4b9 100755 --- a/java/src/org/broadinstitute/sting/gatk/refdata/TabularROD.java +++ b/java/src/org/broadinstitute/sting/gatk/refdata/TabularROD.java @@ -196,8 +196,12 @@ public class TabularROD extends BasicReferenceOrderedDatum implements Map getHeader() { @@ -258,7 +262,9 @@ public class TabularROD extends BasicReferenceOrderedDatum implements Map>>>> " + row.toString()); assertTrue(row.toString().equals("chrM:1\t1\t2\t3")); } @@ -176,14 +177,14 @@ public class TabularRODTest extends BaseTest { RODIterator iter_commas = ROD_commas.iterator(); TabularROD one = (TabularROD)iter_commas.next(); - assertTrue(one.size() == 3); + assertTrue(one.size() == 4); assertTrue(one.getLocation().equals(new GenomeLoc("chrM", 1))); assertTrue(one.get("col1").equals("1")); assertTrue(one.get("col2").equals("2")); assertTrue(one.get("col3").equals("3")); TabularROD two = (TabularROD)iter_commas.next(); - assertTrue(two.size() == 3); + assertTrue(two.size() == 4); assertTrue(two.getLocation().equals(new GenomeLoc("chrM", 2))); assertTrue(two.get("col1").equals("3")); assertTrue(two.get("col2").equals("4"));