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Fix the CachingIndexedFastaSequenceFileUnitTest 

BaseUtils.convertIUPACtoN() no longer throws a UserException,
since it's in org.broadinstitute.variant
This commit is contained in:
David Roazen 2013-01-29 20:30:36 -05:00
parent 29fd536c28
commit 6449c320b4
1 changed files with 1 additions and 1 deletions
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2
public/java/test/org/broadinstitute/sting/utils/fasta/CachingIndexedFastaSequenceFileUnitTest.java
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@ -252,7 +252,7 @@ public class CachingIndexedFastaSequenceFileUnitTest extends BaseTest {
Assert.assertEquals(changingNs, preservingNs + 4); Assert.assertEquals(changingNs, preservingNs + 4);
} }
@Test(enabled = true, expectedExceptions = {UserException.class}) @Test(enabled = true, expectedExceptions = {IllegalStateException.class})
public void testFailOnBadBase() throws FileNotFoundException, InterruptedException { public void testFailOnBadBase() throws FileNotFoundException, InterruptedException {
final String testFasta = privateTestDir + "problematicFASTA.fasta"; final String testFasta = privateTestDir + "problematicFASTA.fasta";
final CachingIndexedFastaSequenceFile fasta = new CachingIndexedFastaSequenceFile(new File(testFasta)); final CachingIndexedFastaSequenceFile fasta = new CachingIndexedFastaSequenceFile(new File(testFasta));