From 6449c320b482132bf1b3c29aa744607f488af781 Mon Sep 17 00:00:00 2001
From: David Roazen <droazen@broadinstitute.org>
Date: Tue, 29 Jan 2013 20:30:36 -0500
Subject: [PATCH] Fix the CachingIndexedFastaSequenceFileUnitTest

BaseUtils.convertIUPACtoN() no longer throws a UserException,
since it's in org.broadinstitute.variant
---
 .../utils/fasta/CachingIndexedFastaSequenceFileUnitTest.java    | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/public/java/test/org/broadinstitute/sting/utils/fasta/CachingIndexedFastaSequenceFileUnitTest.java b/public/java/test/org/broadinstitute/sting/utils/fasta/CachingIndexedFastaSequenceFileUnitTest.java
index 0c1b5b069..b65811103 100644
--- a/public/java/test/org/broadinstitute/sting/utils/fasta/CachingIndexedFastaSequenceFileUnitTest.java
+++ b/public/java/test/org/broadinstitute/sting/utils/fasta/CachingIndexedFastaSequenceFileUnitTest.java
@@ -252,7 +252,7 @@ public class CachingIndexedFastaSequenceFileUnitTest extends BaseTest {
         Assert.assertEquals(changingNs, preservingNs + 4);
     }
 
-    @Test(enabled = true, expectedExceptions = {UserException.class})
+    @Test(enabled = true, expectedExceptions = {IllegalStateException.class})
     public void testFailOnBadBase() throws FileNotFoundException, InterruptedException {
         final String testFasta = privateTestDir + "problematicFASTA.fasta";
         final CachingIndexedFastaSequenceFile fasta = new CachingIndexedFastaSequenceFile(new File(testFasta));