diff --git a/java/src/org/broadinstitute/sting/gatk/refdata/RodVCF.java b/java/src/org/broadinstitute/sting/gatk/refdata/RodVCF.java index 4ea4e601a..91639f7d6 100755 --- a/java/src/org/broadinstitute/sting/gatk/refdata/RodVCF.java +++ b/java/src/org/broadinstitute/sting/gatk/refdata/RodVCF.java @@ -21,15 +21,24 @@ import java.util.*; * An implementation of the ROD for VCF. */ public class RodVCF extends BasicReferenceOrderedDatum implements VariationRod, VariantBackedByGenotype, Iterator { + public VCFReader getReader() { + return mReader; + } + // our VCF related information private VCFReader mReader; + + public VCFRecord getRecord() { + return mCurrentRecord; + } + public VCFRecord mCurrentRecord; public RodVCF(String name) { super(name); } - private RodVCF(String name, VCFRecord currentRecord, VCFReader reader) { + public RodVCF(String name, VCFRecord currentRecord, VCFReader reader) { super(name); mCurrentRecord = currentRecord; mReader = reader;