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Fixing typos in AnalyzeCovariates

This commit is contained in:
Ryan Poplin 2014-07-31 10:36:18 -04:00
parent 66ccc636b8
commit 63b3f7dfd3
1 changed files with 3 additions and 3 deletions
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6
protected/gatk-tools-protected/src/main/java/org/broadinstitute/gatk/tools/walkers/bqsr/AnalyzeCovariates.java
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@ -70,9 +70,9 @@ import java.util.Map;
/** /**
* Tool to analyze and evaluate base recalibration ables. * Tool to analyze and evaluate base recalibration tables.
* <p/> * <p/>
* For now it generates a plot report to assess the quality of a recalibration. * It generates plots to assess the quality of a recalibration run.
* *
* <h3>Input</h3> * <h3>Input</h3>
* *
@ -188,7 +188,7 @@ import java.util.Map;
* ... other options \ * ... other options \
* -o secondpass.table * -o secondpass.table
* *
* # Finally generate the plots report and also keep a copy of the csv (optional). * # Finally generate the plots and also keep a copy of the csv (optional).
* java -jar GenomeAnalysisTK.jar \ * java -jar GenomeAnalysisTK.jar \
* -T AnalyzeCovariates \ * -T AnalyzeCovariates \
* -R myrefernce.fasta \ * -R myrefernce.fasta \