From 63b3f7dfd3c5e2c912a28c4adf70c654959feaf8 Mon Sep 17 00:00:00 2001
From: Ryan Poplin <rpoplin@broadinstitute.org>
Date: Thu, 31 Jul 2014 10:36:18 -0400
Subject: [PATCH] Fixing typos in AnalyzeCovariates

---
 .../gatk/tools/walkers/bqsr/AnalyzeCovariates.java          | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/protected/gatk-tools-protected/src/main/java/org/broadinstitute/gatk/tools/walkers/bqsr/AnalyzeCovariates.java b/protected/gatk-tools-protected/src/main/java/org/broadinstitute/gatk/tools/walkers/bqsr/AnalyzeCovariates.java
index 9df9d8cc9..cd24f41e2 100644
--- a/protected/gatk-tools-protected/src/main/java/org/broadinstitute/gatk/tools/walkers/bqsr/AnalyzeCovariates.java
+++ b/protected/gatk-tools-protected/src/main/java/org/broadinstitute/gatk/tools/walkers/bqsr/AnalyzeCovariates.java
@@ -70,9 +70,9 @@ import java.util.Map;
 
 
 /**
- * Tool to analyze and evaluate base recalibration ables.
+ * Tool to analyze and evaluate base recalibration tables.
  * <p/>
- * For now it generates a plot report to assess the quality of a recalibration.
+ * It generates plots to assess the quality of a recalibration run.
  *
  * <h3>Input</h3>
  *
@@ -188,7 +188,7 @@ import java.util.Map;
  *      ... other options \
  *      -o secondpass.table
  *
- * # Finally generate the plots report and also keep a copy of the csv (optional).
+ * # Finally generate the plots and also keep a copy of the csv (optional).
  * java -jar GenomeAnalysisTK.jar \
  *      -T AnalyzeCovariates \
  *      -R myrefernce.fasta \