diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/qc/CountReads.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/qc/CountReads.java index 301fa5b9b..1d2c6c9cc 100755 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/qc/CountReads.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/qc/CountReads.java @@ -33,7 +33,6 @@ import org.broadinstitute.sting.utils.sam.GATKSAMRecord; * java -Xmx2g -jar GenomeAnalysisTK.jar \ * -R ref.fasta \ * -T CountReads \ - * -o output.txt \ * -I input.bam \ * [-L input.intervals] *