CountReads does not permit the use of output files

2012-10-11 13:59:21 -04:00 · 2012-10-11 13:59:21 -04:00 · 637e0cf151
parent a5333006bb
commit 637e0cf151
1 changed files with 0 additions and 1 deletions
--- a/public/java/src/org/broadinstitute/sting/gatk/walkers/qc/CountReads.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/qc/CountReads.java
@ -33,7 +33,6 @@ import org.broadinstitute.sting.utils.sam.GATKSAMRecord;
 * java -Xmx2g -jar GenomeAnalysisTK.jar \
 *   -R ref.fasta \
 *   -T CountReads \
- *   -o output.txt \
 *   -I input.bam \
 *   [-L input.intervals]
 * </pre>