From 635f61c22d022624cfda3992b80a6a8c22d6bb26 Mon Sep 17 00:00:00 2001
From: chartl <chartl@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Tue, 18 May 2010 18:56:01 +0000
Subject: [PATCH] Clone the other guy too

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3381 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/gatk/walkers/coverage/DepthOfCoverageWalker.java      | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverageWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverageWalker.java
index d9e9fa584..129a2b15b 100644
--- a/java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverageWalker.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverageWalker.java
@@ -377,7 +377,7 @@ public class DepthOfCoverageWalker extends LocusWalker<Map<CoverageAggregator.Ag
             if ( geneNamesToStats.keySet().contains(gene) ) {
                 geneNamesToStats.get(gene).merge(targetStats.second.getCoverageByAggregationType(CoverageAggregator.AggregationType.SAMPLE));
             } else {
-                geneNamesToStats.put(gene,targetStats.second.getCoverageByAggregationType(CoverageAggregator.AggregationType.SAMPLE));
+                geneNamesToStats.put(gene,new DepthOfCoverageStats(targetStats.second.getCoverageByAggregationType(CoverageAggregator.AggregationType.SAMPLE)));
                 statsByGene.add(new Pair<String,DepthOfCoverageStats>(gene,new DepthOfCoverageStats(targetStats.second.getCoverageByAggregationType(CoverageAggregator.AggregationType.SAMPLE))));
             }
         }