zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Clone the other guy too 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3381 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
chartl 2010-05-18 18:56:01 +00:00
parent 9e15299475
commit 635f61c22d
1 changed files with 1 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverageWalker.java
View File

@ -377,7 +377,7 @@ public class DepthOfCoverageWalker extends LocusWalker<Map<CoverageAggregator.Ag
if ( geneNamesToStats.keySet().contains(gene) ) {
geneNamesToStats.get(gene).merge(targetStats.second.getCoverageByAggregationType(CoverageAggregator.AggregationType.SAMPLE));
} else {
geneNamesToStats.put(gene,targetStats.second.getCoverageByAggregationType(CoverageAggregator.AggregationType.SAMPLE));
geneNamesToStats.put(gene,new DepthOfCoverageStats(targetStats.second.getCoverageByAggregationType(CoverageAggregator.AggregationType.SAMPLE)));
statsByGene.add(new Pair<String,DepthOfCoverageStats>(gene,new DepthOfCoverageStats(targetStats.second.getCoverageByAggregationType(CoverageAggregator.AggregationType.SAMPLE))));
}
}