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disable a part of the ROD for Reads code until the rest of the system goes live 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2896 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
aaron 2010-02-26 16:15:42 +00:00
parent 496ecc8186
commit 622554d7bd
1 changed files with 4 additions and 4 deletions
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8
java/src/org/broadinstitute/sting/gatk/datasources/simpleDataSources/ReferenceOrderedDataSource.java
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@ -116,10 +116,10 @@ class ReferenceOrderedDataPool extends ResourcePool<FlashBackIterator, FlashBack
if( (RODIterator.position() == null && RODIterator.hasNext()) || if( (RODIterator.position() == null && RODIterator.hasNext()) ||
(RODIterator.position() != null && RODIterator.position().isBefore(position)) ) (RODIterator.position() != null && RODIterator.position().isBefore(position)) )
return RODIterator; return RODIterator;
if ((RODIterator.position() != null && RODIterator.canFlashBackTo(position))) { // if (RODIterator.position() != null && RODIterator.canFlashBackTo(position)) {
RODIterator.flashBackTo(position); // RODIterator.flashBackTo(position);
return RODIterator; // return RODIterator;
} // }
} }
return null; return null;