From 622554d7bdc492579c69f27cc2673381d9285486 Mon Sep 17 00:00:00 2001
From: aaron <aaron@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Fri, 26 Feb 2010 16:15:42 +0000
Subject: [PATCH] disable a part of the ROD for Reads code until the rest of
 the system goes live

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2896 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../simpleDataSources/ReferenceOrderedDataSource.java     | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/datasources/simpleDataSources/ReferenceOrderedDataSource.java b/java/src/org/broadinstitute/sting/gatk/datasources/simpleDataSources/ReferenceOrderedDataSource.java
index c86c0d4ed..e1c010622 100755
--- a/java/src/org/broadinstitute/sting/gatk/datasources/simpleDataSources/ReferenceOrderedDataSource.java
+++ b/java/src/org/broadinstitute/sting/gatk/datasources/simpleDataSources/ReferenceOrderedDataSource.java
@@ -116,10 +116,10 @@ class ReferenceOrderedDataPool extends ResourcePool<FlashBackIterator, FlashBack
                 if( (RODIterator.position() == null && RODIterator.hasNext()) ||
                     (RODIterator.position() != null && RODIterator.position().isBefore(position)) )
                     return RODIterator;
-                if ((RODIterator.position() != null && RODIterator.canFlashBackTo(position))) {
-                    RODIterator.flashBackTo(position);
-                    return RODIterator;
-                }
+//                if (RODIterator.position() != null && RODIterator.canFlashBackTo(position)) {
+//                    RODIterator.flashBackTo(position);
+//                    return RODIterator;
+//                }
 
             }
             return null;