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Fix for NullPointer where a run starts but there's nothing to do (no shards) and reduceInit() wasn't being called correctly 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5096 348d0f76-0448-11de-a6fe-93d51630548a
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depristo 2011-01-27 15:15:10 +00:00
parent f522eb2848
commit 61c29d550d
1 changed files with 1 additions and 1 deletions
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java/src/org/broadinstitute/sting/gatk/executive/Accumulator.java
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@ -126,7 +126,7 @@ public abstract class Accumulator {
* The result of the traversal is the list of accumulated intervals. * The result of the traversal is the list of accumulated intervals.
*/ */
public Object finishTraversal() { public Object finishTraversal() {
walker.onTraversalDone(accumulator); walker.onTraversalDone(getReduceInit()); // must call getReduceInit to ensure that we get the accumulator value or the reduceInit value
return this.accumulator; return this.accumulator;
} }
} }