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Allow large-scale tests 5 hours each to run

This commit is contained in:
David Roazen 2012-11-01 17:48:58 -04:00
parent 386b45e94d
commit 6185e8c432
3 changed files with 6 additions and 6 deletions
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6
public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperLargeScaleTest.java
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@ -7,7 +7,7 @@ import java.util.ArrayList;
public class UnifiedGenotyperLargeScaleTest extends WalkerTest { public class UnifiedGenotyperLargeScaleTest extends WalkerTest {
@Test @Test( timeOut = 18000000 )
public void testUnifiedGenotyperWholeGenome() { public void testUnifiedGenotyperWholeGenome() {
WalkerTestSpec spec = new WalkerTestSpec( WalkerTestSpec spec = new WalkerTestSpec(
"-R " + hg18Reference + "-R " + hg18Reference +
@ -22,7 +22,7 @@ public class UnifiedGenotyperLargeScaleTest extends WalkerTest {
executeTest("testUnifiedGenotyperWholeGenome", spec); executeTest("testUnifiedGenotyperWholeGenome", spec);
} }
@Test @Test( timeOut = 18000000 )
public void testUnifiedGenotyperWholeExome() { public void testUnifiedGenotyperWholeExome() {
WalkerTestSpec spec = new WalkerTestSpec( WalkerTestSpec spec = new WalkerTestSpec(
"-R " + hg18Reference + "-R " + hg18Reference +
@ -37,7 +37,7 @@ public class UnifiedGenotyperLargeScaleTest extends WalkerTest {
executeTest("testUnifiedGenotyperWholeExome", spec); executeTest("testUnifiedGenotyperWholeExome", spec);
} }
@Test @Test( timeOut = 18000000 )
public void testUnifiedGenotyperWGParallel() { public void testUnifiedGenotyperWGParallel() {
WalkerTestSpec spec = new WalkerTestSpec( WalkerTestSpec spec = new WalkerTestSpec(
"-R " + hg18Reference + "-R " + hg18Reference +

4
public/java/test/org/broadinstitute/sting/gatk/walkers/indels/IndelRealignerLargeScaleTest.java
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@ -6,7 +6,7 @@ import org.testng.annotations.Test;
import java.util.ArrayList; import java.util.ArrayList;
public class IndelRealignerLargeScaleTest extends WalkerTest { public class IndelRealignerLargeScaleTest extends WalkerTest {
@Test @Test( timeOut = 18000000 )
public void testHighCoverage() { public void testHighCoverage() {
WalkerTestSpec spec = new WalkerTestSpec( WalkerTestSpec spec = new WalkerTestSpec(
@ -21,7 +21,7 @@ public class IndelRealignerLargeScaleTest extends WalkerTest {
executeTest("testIndelRealignerHighCoverage", spec); executeTest("testIndelRealignerHighCoverage", spec);
} }
@Test @Test( timeOut = 18000000 )
public void testRealigner() { public void testRealigner() {
WalkerTestSpec spec1 = new WalkerTestSpec( WalkerTestSpec spec1 = new WalkerTestSpec(

2
public/java/test/org/broadinstitute/sting/gatk/walkers/indels/RealignerTargetCreatorLargeScaleTest.java
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@ -6,7 +6,7 @@ import org.testng.annotations.Test;
import java.util.ArrayList; import java.util.ArrayList;
public class RealignerTargetCreatorLargeScaleTest extends WalkerTest { public class RealignerTargetCreatorLargeScaleTest extends WalkerTest {
@Test @Test( timeOut = 18000000 )
public void testRealignerTargetCreator() { public void testRealignerTargetCreator() {
WalkerTestSpec spec1 = new WalkerTestSpec( WalkerTestSpec spec1 = new WalkerTestSpec(