diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvaluator.java b/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvaluator.java index e5f7abf0f..961459745 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvaluator.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvaluator.java @@ -14,7 +14,7 @@ import org.broadinstitute.sting.gatk.contexts.variantcontext.VariantContext; * This software is supplied without any warranty or guaranteed support whatsoever. Neither * the Broad Institute nor MIT can be responsible for its use, misuse, or functionality. */ -public abstract class VariantEvaluator { +abstract class VariantEvaluator { // protected boolean accumulateInterestingSites = false, printInterestingSites = false; // protected String interestingSitePrefix = null; protected boolean processedASite = false; diff --git a/java/src/org/broadinstitute/sting/oneoffprojects/walkers/varianteval/AminoAcidTransition.java b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/varianteval/AminoAcidTransition.java index 45406f758..cab8c1dc0 100755 --- a/java/src/org/broadinstitute/sting/oneoffprojects/walkers/varianteval/AminoAcidTransition.java +++ b/java/src/org/broadinstitute/sting/oneoffprojects/walkers/varianteval/AminoAcidTransition.java @@ -1,4 +1,4 @@ -package org.broadinstitute.sting.oneoffprojects.walkers.varianteval; +package org.broadinstitute.sting.gatk.walkers.varianteval; import org.broadinstitute.sting.gatk.contexts.AlignmentContext; import org.broadinstitute.sting.gatk.contexts.ReferenceContext; @@ -150,7 +150,7 @@ public class AminoAcidTransition extends VariantEvaluator { } public boolean enabled() { - return true; + return false; } public String toString() { @@ -189,4 +189,4 @@ public class AminoAcidTransition extends VariantEvaluator { //public void finalizeEvaluation() { // //} -} \ No newline at end of file +}