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Cool package trick Kiran showed me. VariantEvaluator no longer public, AAT specifies the core package even though it lives in oneoffs. Disabled so integration tests pass. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3677 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
chartl 2010-06-29 22:42:04 +00:00
parent 4c6f4e41c6
commit 610cc7ae2b
2 changed files with 4 additions and 4 deletions
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2
java/src/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvaluator.java
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@ -14,7 +14,7 @@ import org.broadinstitute.sting.gatk.contexts.variantcontext.VariantContext;
* This software is supplied without any warranty or guaranteed support whatsoever. Neither
* the Broad Institute nor MIT can be responsible for its use, misuse, or functionality.
*/
public abstract class VariantEvaluator {
abstract class VariantEvaluator {
// protected boolean accumulateInterestingSites = false, printInterestingSites = false;
// protected String interestingSitePrefix = null;
protected boolean processedASite = false;

6
java/src/org/broadinstitute/sting/oneoffprojects/walkers/varianteval/AminoAcidTransition.java
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@ -1,4 +1,4 @@
package org.broadinstitute.sting.oneoffprojects.walkers.varianteval;
package org.broadinstitute.sting.gatk.walkers.varianteval;
import org.broadinstitute.sting.gatk.contexts.AlignmentContext;
import org.broadinstitute.sting.gatk.contexts.ReferenceContext;
@ -150,7 +150,7 @@ public class AminoAcidTransition extends VariantEvaluator {
}
public boolean enabled() {
return true;
return false;
}
public String toString() {
@ -189,4 +189,4 @@ public class AminoAcidTransition extends VariantEvaluator {
//public void finalizeEvaluation() {
//
//}
}
}