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Stupid me. Forgot to put this check in the last commit 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4959 348d0f76-0448-11de-a6fe-93d51630548a
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ebanks 2011-01-07 19:16:41 +00:00
parent 56b87da8f9
commit 60f45a7c49
1 changed files with 2 additions and 0 deletions
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2
java/src/org/broadinstitute/sting/gatk/walkers/annotator/QualByDepth.java
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@ -66,6 +66,8 @@ public class QualByDepth implements InfoFieldAnnotation, StandardAnnotation {
public List<VCFInfoHeaderLine> getDescriptions() { return Arrays.asList(new VCFInfoHeaderLine(getKeyNames().get(0), 1, VCFHeaderLineType.Float, "Variant Confidence/Quality by Depth")); }
private double getQual(double[] GLs) {
if ( GLs == null )
return 0.0;
// normalize so that we don't have precision issues
double[] adjustedLikelihoods = new double[GLs.length];