From 607731da91847553b0fc7fc7a16ccd634e6bf5ae Mon Sep 17 00:00:00 2001
From: kiran <kiran@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 25 Mar 2009 15:20:29 +0000
Subject: [PATCH] Fixed a harmless (but annoying) bug wherein the read name for
 the SAMRecords increases by two on every iteration rather than one.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@189 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/playground/fourbasecaller/FourBaseRecaller.java       | 2 --
 1 file changed, 2 deletions(-)

diff --git a/java/src/org/broadinstitute/sting/playground/fourbasecaller/FourBaseRecaller.java b/java/src/org/broadinstitute/sting/playground/fourbasecaller/FourBaseRecaller.java
index 897eb5728..31016b5e7 100644
--- a/java/src/org/broadinstitute/sting/playground/fourbasecaller/FourBaseRecaller.java
+++ b/java/src/org/broadinstitute/sting/playground/fourbasecaller/FourBaseRecaller.java
@@ -165,8 +165,6 @@ public class FourBaseRecaller {
             sr.setBaseQualities(bestqual);
             sr.setAttribute("SQ", nextbestqual);
             sfw.addAlignment(sr);
-
-            queryid++;
         }
 
         sfw.close();