From 60183229abb14acb912678f1ee4e917e40358b77 Mon Sep 17 00:00:00 2001 From: aaron Date: Wed, 14 Oct 2009 19:32:13 +0000 Subject: [PATCH] the oldest java mistake in the book... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1840 348d0f76-0448-11de-a6fe-93d51630548a --- .../broadinstitute/sting/utils/genotype/vcf/VCFParameters.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/java/src/org/broadinstitute/sting/utils/genotype/vcf/VCFParameters.java b/java/src/org/broadinstitute/sting/utils/genotype/vcf/VCFParameters.java index 01832b5e2..798dfb54c 100644 --- a/java/src/org/broadinstitute/sting/utils/genotype/vcf/VCFParameters.java +++ b/java/src/org/broadinstitute/sting/utils/genotype/vcf/VCFParameters.java @@ -65,7 +65,7 @@ class VCFParameters { } public void addAlternateBase(String base) { - if (!alternateBases.contains(String.valueOf(base)) && base != String.valueOf(this.getReferenceBase())) + if (!alternateBases.contains(String.valueOf(base)) && !base.equals(String.valueOf(this.getReferenceBase()))) alternateBases.add(base); }