zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

temperary fix, relying on a old reference order data constructor 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@302 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
aaron 2009-04-06 21:38:41 +00:00
parent af5a443e5a
commit 5feb7ee627
1 changed files with 6 additions and 5 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

11
java/src/org/broadinstitute/sting/gatk/dataSources/simpleDataSources/ReferenceMetaDataSource.java
View File

@ -1,13 +1,13 @@
package org.broadinstitute.sting.gatk.dataSources.simpleDataSources;
import org.broadinstitute.sting.gatk.refdata.HapMapAlleleFrequenciesROD;
import org.broadinstitute.sting.gatk.refdata.ReferenceOrderedData;
import org.broadinstitute.sting.gatk.refdata.ReferenceOrderedDatum;
import org.broadinstitute.sting.gatk.refdata.rodDbSNP;
import org.broadinstitute.sting.utils.GenomeLoc;
import java.io.File;
import java.util.*;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.Iterator;
import java.util.List;
/**
*
@ -92,7 +92,7 @@ public class ReferenceMetaDataSource implements SimpleDataSource {
}
public ReferenceMetaDataSource(HashMap<String, RODTYPE> files) {
/*
// setup a rod list
List<ReferenceOrderedData<? extends ReferenceOrderedDatum>> rods = new ArrayList<ReferenceOrderedData<? extends ReferenceOrderedDatum>>();
@ -114,5 +114,6 @@ public class ReferenceMetaDataSource implements SimpleDataSource {
}
}
}
*/
}
}