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One more VariantsToTable bug fix

This commit is contained in:
Guillermo del Angel 2012-05-14 14:10:07 -04:00
parent 04d691f04a
commit 5fc3adbb04
1 changed files with 2 additions and 1 deletions
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3
public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantsToTable.java
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@ -169,6 +169,7 @@ public class VariantsToTable extends RodWalker<Integer, Integer> {
samples.addAll(vcfSamples); samples.addAll(vcfSamples);
StringBuilder sb = new StringBuilder(); StringBuilder sb = new StringBuilder();
sb.append("\t");
for (final String sample : samples) { for (final String sample : samples) {
for (final String gf : genotypeFieldsToTake) { for (final String gf : genotypeFieldsToTake) {
sb.append(sample+"."+gf+"\t"); sb.append(sample+"."+gf+"\t");
@ -177,7 +178,7 @@ public class VariantsToTable extends RodWalker<Integer, Integer> {
genotypeHeader = sb.toString(); genotypeHeader = sb.toString();
} }
// print out the header // print out the header
out.println(Utils.join("\t", fieldsToTake) + "\t"+genotypeHeader); out.println(Utils.join("\t", fieldsToTake) + genotypeHeader);
} }
public Integer map(RefMetaDataTracker tracker, ReferenceContext ref, AlignmentContext context) { public Integer map(RefMetaDataTracker tracker, ReferenceContext ref, AlignmentContext context) {