From 5fc3adbb047a8620d5bf61bdce23eda3c9523f2e Mon Sep 17 00:00:00 2001 From: Guillermo del Angel Date: Mon, 14 May 2012 14:10:07 -0400 Subject: [PATCH] One more VariantsToTable bug fix --- .../sting/gatk/walkers/variantutils/VariantsToTable.java | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantsToTable.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantsToTable.java index 55522c3f9..0c7ed08cf 100755 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantsToTable.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantsToTable.java @@ -169,6 +169,7 @@ public class VariantsToTable extends RodWalker { samples.addAll(vcfSamples); StringBuilder sb = new StringBuilder(); + sb.append("\t"); for (final String sample : samples) { for (final String gf : genotypeFieldsToTake) { sb.append(sample+"."+gf+"\t"); @@ -177,7 +178,7 @@ public class VariantsToTable extends RodWalker { genotypeHeader = sb.toString(); } // print out the header - out.println(Utils.join("\t", fieldsToTake) + "\t"+genotypeHeader); + out.println(Utils.join("\t", fieldsToTake) + genotypeHeader); } public Integer map(RefMetaDataTracker tracker, ReferenceContext ref, AlignmentContext context) {