Reverting move of BQSR tests to public, as per DR's email

This commit is contained in:
Eric Banks 2012-07-19 10:02:05 -04:00
parent e370030e6c
commit 5f5edeca63
4 changed files with 3 additions and 94995 deletions

View File

@ -36,7 +36,7 @@ public class BQSRIntegrationTest extends WalkerTest {
@DataProvider(name = "BQSRTest")
public Object[][] createBQSRTestData() {
String HiSeqBam = publicTestDir + "HiSeq.1mb.1RG.bam";
String HiSeqBam = privateTestDir + "HiSeq.1mb.1RG.bam";
String HiSeqInterval = "chr1:10,000,000-10,100,000";
return new Object[][]{
{new BQSRTest(hg18Reference, HiSeqBam, HiSeqInterval, "", "087dbc3e3f0cee6b891aecad2d0faf25")},
@ -115,8 +115,8 @@ public class BQSRIntegrationTest extends WalkerTest {
WalkerTestSpec spec = new WalkerTestSpec(
"-T PrintReads" +
" -R " + hg18Reference +
" -I " + publicTestDir + "HiSeq.1mb.1RG.bam" +
" -BQSR " + publicTestDir + "HiSeq.1mb.1RG.table" +
" -I " + privateTestDir + "HiSeq.1mb.1RG.bam" +
" -BQSR " + privateTestDir + "HiSeq.1mb.1RG.table" +
params.args +
" -o %s",
Arrays.asList(params.md5));

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