diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/TableRecalibrationWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/TableRecalibrationWalker.java index 7c57f9ded..bd709e2fe 100644 --- a/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/TableRecalibrationWalker.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/recalibration/TableRecalibrationWalker.java @@ -94,7 +94,7 @@ public class TableRecalibrationWalker extends ReadWalker * Class ArtificialSAMFileWriter *

- * generates a fike samwriter, that you can get the output reads + * generates a fake samwriter, that you can get the output reads * from when you're done. */ public class ArtificialSAMFileWriter implements SAMFileWriter { diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java index ecd74c118..ac61dddee 100755 --- a/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java +++ b/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java @@ -79,7 +79,7 @@ public class RecalibrationWalkersIntegrationTest extends WalkerTest { @Test public void testTableRecalibratorMaxQ70() { HashMap e = new HashMap(); - e.put( validationDataLocation + "NA12878.1kg.p2.chr1_10mb_11_mb.SOLID.bam", "c12b4fd5b4905cc632aa1da19be5c66a" ); + e.put( validationDataLocation + "NA12878.1kg.p2.chr1_10mb_11_mb.SOLID.bam", "bf8d62beda7d3cf38d660d7939901192" ); for ( Map.Entry entry : e.entrySet() ) { String bam = entry.getKey();