From 5ed2818ffbfd8ebd76635f568e000dbd367bbde0 Mon Sep 17 00:00:00 2001
From: chartl <chartl@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Tue, 8 Jun 2010 21:01:35 +0000
Subject: [PATCH] Forgot to commit code i relied upon

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3503 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../gatk/walkers/varianteval/MendelianViolationEvaluator.java | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/MendelianViolationEvaluator.java b/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/MendelianViolationEvaluator.java
index fd51704ab..d90af98db 100755
--- a/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/MendelianViolationEvaluator.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/MendelianViolationEvaluator.java
@@ -157,6 +157,10 @@ public class MendelianViolationEvaluator extends VariantEvaluator {
         return isViolation(vc, momG.getAlleles(), dadG.getAlleles(), childG.getAlleles());
     }
 
+    public static boolean isViolation(VariantContext vc, TrioStructure trio ) {
+        return isViolation(vc, vc.getGenotype(trio.mom), vc.getGenotype(trio.dad), vc.getGenotype(trio.child) );
+    }
+
     public static boolean isViolation(VariantContext vc, List<Allele> momA, List<Allele> dadA, List<Allele> childA) {
         //VariantContext momVC = vc.subContextFromGenotypes(momG);
         //VariantContext dadVC = vc.subContextFromGenotypes(dadG);