diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/MendelianViolationEvaluator.java b/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/MendelianViolationEvaluator.java index fd51704ab..d90af98db 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/MendelianViolationEvaluator.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/MendelianViolationEvaluator.java @@ -157,6 +157,10 @@ public class MendelianViolationEvaluator extends VariantEvaluator { return isViolation(vc, momG.getAlleles(), dadG.getAlleles(), childG.getAlleles()); } + public static boolean isViolation(VariantContext vc, TrioStructure trio ) { + return isViolation(vc, vc.getGenotype(trio.mom), vc.getGenotype(trio.dad), vc.getGenotype(trio.child) ); + } + public static boolean isViolation(VariantContext vc, List momA, List dadA, List childA) { //VariantContext momVC = vc.subContextFromGenotypes(momG); //VariantContext dadVC = vc.subContextFromGenotypes(dadG);