Minor change but I realized from Mark's commit that the code I stole it from was flawed
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@ -613,7 +613,7 @@ public class GenomeAnalysisEngine {
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*/
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protected GenomeLocSortedSet loadIntervals( List<IntervalBinding<Feature>> argList, IntervalSetRule rule ) {
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protected GenomeLocSortedSet loadIntervals( List<IntervalBinding<Feature>> argList, IntervalSetRule rule ) {
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List<GenomeLoc> allIntervals = new ArrayList<GenomeLoc>(0);
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List<GenomeLoc> allIntervals = new ArrayList<GenomeLoc>();
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for ( IntervalBinding intervalBinding : argList ) {
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for ( IntervalBinding intervalBinding : argList ) {
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List<GenomeLoc> intervals = intervalBinding.getIntervals(this);
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List<GenomeLoc> intervals = intervalBinding.getIntervals(this);
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