Support for style.css via refactored common.html included in all files
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d0ab6bf7a9
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@ -30,8 +30,10 @@ import freemarker.template.Configuration;
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import freemarker.template.DefaultObjectWrapper;
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import freemarker.template.DefaultObjectWrapper;
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import freemarker.template.Template;
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import freemarker.template.Template;
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import freemarker.template.TemplateException;
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import freemarker.template.TemplateException;
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import org.apache.commons.io.FileUtils;
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import org.apache.log4j.Logger;
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import org.apache.log4j.Logger;
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import org.broadinstitute.sting.utils.exceptions.ReviewedStingException;
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import org.broadinstitute.sting.utils.exceptions.ReviewedStingException;
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import sun.misc.IOUtils;
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import java.io.*;
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import java.io.*;
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import java.util.*;
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import java.util.*;
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@ -40,6 +42,8 @@ import java.util.*;
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*
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*
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*/
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*/
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public class GATKDoclet extends ResourceBundleExtractorDoclet {
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public class GATKDoclet extends ResourceBundleExtractorDoclet {
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final protected static File SETTINGS_DIR = new File("settings/helpTemplates");
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final protected static File DESTINATION_DIR = new File("testdoc");
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final protected static Logger logger = Logger.getLogger(GATKDoclet.class);
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final protected static Logger logger = Logger.getLogger(GATKDoclet.class);
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public static class DocWorkUnit implements Comparable<DocWorkUnit> {
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public static class DocWorkUnit implements Comparable<DocWorkUnit> {
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@ -128,12 +132,16 @@ public class GATKDoclet extends ResourceBundleExtractorDoclet {
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this.rootDoc = rootDoc;
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this.rootDoc = rootDoc;
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try {
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try {
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// basic setup
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DESTINATION_DIR.mkdirs();
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FileUtils.copyFile(new File(SETTINGS_DIR + "/style.css"), new File(DESTINATION_DIR + "/style.css"));
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/* ------------------------------------------------------------------- */
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/* ------------------------------------------------------------------- */
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/* You should do this ONLY ONCE in the whole application life-cycle: */
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/* You should do this ONLY ONCE in the whole application life-cycle: */
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Configuration cfg = new Configuration();
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Configuration cfg = new Configuration();
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// Specify the data source where the template files come from.
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// Specify the data source where the template files come from.
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cfg.setDirectoryForTemplateLoading(new File("settings/helpTemplates/"));
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cfg.setDirectoryForTemplateLoading(SETTINGS_DIR);
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// Specify how templates will see the data-model. This is an advanced topic...
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// Specify how templates will see the data-model. This is an advanced topic...
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cfg.setObjectWrapper(new DefaultObjectWrapper());
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cfg.setObjectWrapper(new DefaultObjectWrapper());
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@ -200,7 +208,7 @@ public class GATKDoclet extends ResourceBundleExtractorDoclet {
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Template temp = cfg.getTemplate("generic.index.template.html");
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Template temp = cfg.getTemplate("generic.index.template.html");
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/* Merge data-model with template */
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/* Merge data-model with template */
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Writer out = new OutputStreamWriter(new FileOutputStream(new File("testdoc/index.html")));
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Writer out = new OutputStreamWriter(new FileOutputStream(new File(DESTINATION_DIR + "/index.html")));
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try {
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try {
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temp.process(groupIndexData(indexData), out);
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temp.process(groupIndexData(indexData), out);
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out.flush();
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out.flush();
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@ -259,7 +267,7 @@ public class GATKDoclet extends ResourceBundleExtractorDoclet {
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Template temp = cfg.getTemplate(unit.handler.getTemplateName(unit.classDoc));
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Template temp = cfg.getTemplate(unit.handler.getTemplateName(unit.classDoc));
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// Merge data-model with template
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// Merge data-model with template
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File outputPath = new File("testdoc/" + unit.filename);
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File outputPath = new File(DESTINATION_DIR + "/" + unit.filename);
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try {
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try {
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Writer out = new OutputStreamWriter(new FileOutputStream(outputPath));
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Writer out = new OutputStreamWriter(new FileOutputStream(outputPath));
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temp.process(unit.forTemplate, out);
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temp.process(unit.forTemplate, out);
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@ -1,5 +1,7 @@
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<#include "common.html"/>
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<#macro emitGroup group>
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<#macro emitGroup group>
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<table border="1" cellpadding="2">
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<table border="1" cellpadding="2" width="100%">
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<h2>${group.name}</h2>
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<h2>${group.name}</h2>
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<p>
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<p>
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${group.summary}
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${group.summary}
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@ -20,9 +22,7 @@
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</#macro>
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</#macro>
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<html>
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<html>
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<head>
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<@makeHeader title="GATK documentation index"/>
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<title>GATK documentation index</title>
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</head>
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<body>
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<body>
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<h1>GATK documentation index</h1>
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<h1>GATK documentation index</h1>
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<#list groups as group>
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<#list groups as group>
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@ -1,3 +1,5 @@
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<#include "common.html"/>
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<#macro argumentlist name myargs>
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<#macro argumentlist name myargs>
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<#if myargs?size != 0>
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<#if myargs?size != 0>
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<tr><th colspan="4" align="left">${name}</th></tr>
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<tr><th colspan="4" align="left">${name}</th></tr>
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@ -39,12 +41,9 @@
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</#if>
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</#if>
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</#list>
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</#list>
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</#macro>
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</#macro>
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<html>
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<html>
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<head>
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<@makeHeader title="${name} documentation"/>
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<title>${name} documentation</title>
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</head>
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<body>
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<body>
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<h1>${name}<h1>
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<h1>${name}<h1>
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<h2>Brief summary</h2>
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<h2>Brief summary</h2>
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@ -60,7 +59,7 @@
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<#if arguments.all?size != 0>
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<#if arguments.all?size != 0>
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<hr>
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<hr>
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<h2>Feature specific arguments</h2>
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<h2>Feature specific arguments</h2>
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<table border="1" cellpadding="2">
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<table border="1" cellpadding="2" width="100%">
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<tr>
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<tr>
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<th>Name</th>
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<th>Name</th>
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<th>Synonyms</th>
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<th>Synonyms</th>
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@ -90,10 +89,10 @@
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<#-- This class is related to other documented classes via sub/super relationships -->
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<#-- This class is related to other documented classes via sub/super relationships -->
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<#if relatedDocs?size != 0>
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<#if relatedDocs?size != 0>
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<hr>
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<h2>Related capabilities</h2>
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<h2>Related capabilities</h2>
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<@relatedByType name="Superclasses" type="superclass"/>
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<@relatedByType name="Superclasses" type="superclass"/>
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<@relatedByType name="Subclasses" type="subclass"/>
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<@relatedByType name="Subclasses" type="subclass"/>
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<hr>
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</#if>
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</#if>
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<#-- List all of the -->
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<#-- List all of the -->
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