From 5dca1e4d2e44d734b95a89e46cb9e416dfd4bae0 Mon Sep 17 00:00:00 2001
From: hanna <hanna@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Mon, 23 May 2011 19:59:47 +0000
Subject: [PATCH] Make IntervalIntegrationTest aware of the new alignments in
 the MV1994.bam testset.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5852 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/utils/interval/IntervalIntegrationTest.java     | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/java/test/org/broadinstitute/sting/utils/interval/IntervalIntegrationTest.java b/java/test/org/broadinstitute/sting/utils/interval/IntervalIntegrationTest.java
index 0f0a735f0..2fab1f287 100644
--- a/java/test/org/broadinstitute/sting/utils/interval/IntervalIntegrationTest.java
+++ b/java/test/org/broadinstitute/sting/utils/interval/IntervalIntegrationTest.java
@@ -76,8 +76,8 @@ public class IntervalIntegrationTest extends WalkerTest {
         // our base file
         File baseOutputFile = createTempFile("testUnmappedReadInclusion",".bam");
         spec.setOutputFileLocation(baseOutputFile);
-        spec.addAuxFile("fcd11cfa8474472c617d400623a30fcd",createTempFileFromBase(baseOutputFile.getAbsolutePath()));
-        spec.addAuxFile("3d1f077727e6b68e20a2095d034e56d7", createTempFileFromBase(baseOutputFile.getAbsolutePath().substring(0,baseOutputFile.getAbsolutePath().indexOf(".bam"))+".bai"));
+        spec.addAuxFile("99c266d777e2e167b8153c858c305fda",createTempFileFromBase(baseOutputFile.getAbsolutePath()));
+        spec.addAuxFile("fadcdf88597b9609c5f2a17f4c6eb455", createTempFileFromBase(baseOutputFile.getAbsolutePath().substring(0,baseOutputFile.getAbsolutePath().indexOf(".bam"))+".bai"));
 
         executeTest("testUnmappedReadInclusion",spec);
     }
@@ -96,8 +96,8 @@ public class IntervalIntegrationTest extends WalkerTest {
         // our base file
         File baseOutputFile = createTempFile("testUnmappedReadExclusion",".bam");
         spec.setOutputFileLocation(baseOutputFile);
-        spec.addAuxFile("3153593c9f9ff80a8551fff5655e65ec",createTempFileFromBase(baseOutputFile.getAbsolutePath()));
-        spec.addAuxFile("7fc574ac72211623e4df74d9f75a4e48", createTempFileFromBase(baseOutputFile.getAbsolutePath().substring(0,baseOutputFile.getAbsolutePath().indexOf(".bam"))+".bai"));
+        spec.addAuxFile("8236f0b2df5a692e54751b08bc3836fa",createTempFileFromBase(baseOutputFile.getAbsolutePath()));
+        spec.addAuxFile("651b42456d31ba24e913297b71b32143", createTempFileFromBase(baseOutputFile.getAbsolutePath().substring(0,baseOutputFile.getAbsolutePath().indexOf(".bam"))+".bai"));
 
         executeTest("testUnmappedReadExclusion",spec);
     }