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Make IntervalIntegrationTest aware of the new alignments in the MV1994.bam 

testset.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5852 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2011-05-23 19:59:47 +00:00
parent 7ff5375493
commit 5dca1e4d2e
1 changed files with 4 additions and 4 deletions
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8
java/test/org/broadinstitute/sting/utils/interval/IntervalIntegrationTest.java
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@ -76,8 +76,8 @@ public class IntervalIntegrationTest extends WalkerTest {
// our base file
File baseOutputFile = createTempFile("testUnmappedReadInclusion",".bam");
spec.setOutputFileLocation(baseOutputFile);
spec.addAuxFile("fcd11cfa8474472c617d400623a30fcd",createTempFileFromBase(baseOutputFile.getAbsolutePath()));
spec.addAuxFile("3d1f077727e6b68e20a2095d034e56d7", createTempFileFromBase(baseOutputFile.getAbsolutePath().substring(0,baseOutputFile.getAbsolutePath().indexOf(".bam"))+".bai"));
spec.addAuxFile("99c266d777e2e167b8153c858c305fda",createTempFileFromBase(baseOutputFile.getAbsolutePath()));
spec.addAuxFile("fadcdf88597b9609c5f2a17f4c6eb455", createTempFileFromBase(baseOutputFile.getAbsolutePath().substring(0,baseOutputFile.getAbsolutePath().indexOf(".bam"))+".bai"));
executeTest("testUnmappedReadInclusion",spec);
}
@ -96,8 +96,8 @@ public class IntervalIntegrationTest extends WalkerTest {
// our base file
File baseOutputFile = createTempFile("testUnmappedReadExclusion",".bam");
spec.setOutputFileLocation(baseOutputFile);
spec.addAuxFile("3153593c9f9ff80a8551fff5655e65ec",createTempFileFromBase(baseOutputFile.getAbsolutePath()));
spec.addAuxFile("7fc574ac72211623e4df74d9f75a4e48", createTempFileFromBase(baseOutputFile.getAbsolutePath().substring(0,baseOutputFile.getAbsolutePath().indexOf(".bam"))+".bai"));
spec.addAuxFile("8236f0b2df5a692e54751b08bc3836fa",createTempFileFromBase(baseOutputFile.getAbsolutePath()));
spec.addAuxFile("651b42456d31ba24e913297b71b32143", createTempFileFromBase(baseOutputFile.getAbsolutePath().substring(0,baseOutputFile.getAbsolutePath().indexOf(".bam"))+".bai"));
executeTest("testUnmappedReadExclusion",spec);
}