From 5dc21431420989c0c6ea969467d52e3ac79db08b Mon Sep 17 00:00:00 2001
From: Mauricio Carneiro <carneiro@broadinstitute.org>
Date: Fri, 20 Jul 2012 17:26:28 -0400
Subject: [PATCH] Removed support for walkers ending with "Walker" from the
 engine.

If your walker has "Walker" in the name, you will have to use "Walker" on the -T to access it.
---
 .../java/src/org/broadinstitute/sting/gatk/WalkerManager.java   | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/public/java/src/org/broadinstitute/sting/gatk/WalkerManager.java b/public/java/src/org/broadinstitute/sting/gatk/WalkerManager.java
index f053c299c..8843d4bfe 100755
--- a/public/java/src/org/broadinstitute/sting/gatk/WalkerManager.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/WalkerManager.java
@@ -49,7 +49,7 @@ public class WalkerManager extends PluginManager<Walker> {
     private ResourceBundle helpText;
 
     public WalkerManager() {
-        super(Walker.class,"walker","Walker");
+        super(Walker.class,"walker","");
         helpText = TextFormattingUtils.loadResourceBundle("StingText");
     }