zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Merge pull request #430 from broadinstitute/gg_patch_queueextensions 

Patched Queue extensions lacking a main class definition
This commit is contained in:
Eric Banks 2013-11-25 08:09:42 -08:00
parent abf70dc071 25bc6e64ae
commit 5da901a8b1
3 changed files with 3 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

1
public/scala/src/org/broadinstitute/sting/queue/extensions/picard/CalculateHsMetrics.scala
View File

@ -38,6 +38,7 @@ import net.sf.picard.analysis.MetricAccumulationLevel
*/
class CalculateHsMetrics extends org.broadinstitute.sting.queue.function.JavaCommandLineFunction with PicardMetricsFunction {
analysisName = "CalculateHsMetrics"
javaMainClass = "net.sf.picard.analysis.directed.CalculateHsMetrics"
@Input(doc="The input SAM or BAM files to analyze. Must be coordinate sorted.", shortName = "input", fullName = "input_bam_files", required = true)
var input: Seq[File] = Nil

1
public/scala/src/org/broadinstitute/sting/queue/extensions/picard/CollectGcBiasMetrics.scala
View File

@ -37,6 +37,7 @@ import java.io.File
*/
class CollectGcBiasMetrics extends org.broadinstitute.sting.queue.function.JavaCommandLineFunction with PicardMetricsFunction {
analysisName = "CollectGcBiasMetrics"
javaMainClass = "net.sf.picard.analysis.CollectGcBiasMetrics"
@Input(doc="The input SAM or BAM files to analyze. Must be coordinate sorted.", shortName = "input", fullName = "input_bam_files", required = true)
var input: Seq[File] = Nil

1
public/scala/src/org/broadinstitute/sting/queue/extensions/picard/CollectMultipleMetrics.scala
View File

@ -37,6 +37,7 @@ import java.io.File
*/
class CollectMultipleMetrics extends org.broadinstitute.sting.queue.function.JavaCommandLineFunction with PicardMetricsFunction{
analysisName = "CollectMultipleMetrics"
javaMainClass = "net.sf.picard.analysis.CollectMultipleMetrics"
@Input(doc="The input SAM or BAM files to analyze. Must be coordinate sorted.", shortName = "input", fullName = "input_bam_files", required = true)
var input: Seq[File] = Nil