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Better run a shorter test -- should take 3 minutes total

This commit is contained in:
Mark DePristo 2012-09-20 18:54:14 -04:00
parent d29218825d
commit 5d758bf97f
1 changed files with 3 additions and 3 deletions
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6
public/java/test/org/broadinstitute/sting/utils/nanoScheduler/NanoSchedulerIntegrationTest.java
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@ -20,8 +20,8 @@ public class NanoSchedulerIntegrationTest extends WalkerTest {
for ( final int nt : Arrays.asList(1, 2) ) for ( final int nt : Arrays.asList(1, 2) )
for ( final int nct : Arrays.asList(1, 2) ) { for ( final int nct : Arrays.asList(1, 2) ) {
// tests.add(new Object[]{ "SNP", "a1c7546f32a8919a3f3a70a04b2e8322", nt, nct }); // tests.add(new Object[]{ "SNP", "a1c7546f32a8919a3f3a70a04b2e8322", nt, nct });
// tests.add(new Object[]{ "INDEL", "0a6d2be79f4f8a4b0eb788cc4751b31b", nt, nct }); //// tests.add(new Object[]{ "INDEL", "0a6d2be79f4f8a4b0eb788cc4751b31b", nt, nct });
tests.add(new Object[]{ "BOTH", "1eaf8ac30cdefd573850e58c1ec38790", nt, nct }); tests.add(new Object[]{ "BOTH", "081d077786ac0af24e9f97259a55209c", nt, nct });
} }
return tests.toArray(new Object[][]{}); return tests.toArray(new Object[][]{});
@ -35,7 +35,7 @@ public class NanoSchedulerIntegrationTest extends WalkerTest {
"-nosl --no_cmdline_in_header -G", "-nosl --no_cmdline_in_header -G",
//"--dbsnp " + b37dbSNP132, //"--dbsnp " + b37dbSNP132,
"-I " + privateTestDir + "NA12878.HiSeq.b37.chr20.10_11mb.bam", "-I " + privateTestDir + "NA12878.HiSeq.b37.chr20.10_11mb.bam",
"-L 20:10,000,000-11,000,000", "-L 20:10,000,000-10,100,000",
"-glm " + glm, "-glm " + glm,
"-nt " + nt, "-nt " + nt,
"-nct " + nct, "-nct " + nct,