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Merged bug fix from Stable into Unstable

This commit is contained in:
Mauricio Carneiro 2011-06-30 13:50:51 -04:00
parent 26c4ef3813 bb6b1d615b
commit 5d112219e7
5 changed files with 6 additions and 4 deletions
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2
public/scala/qscript/core/DataProcessingPipeline.scala → public/scala/qscript/org/broadinstitute/sting/queue/qscripts/DataProcessingPipeline.scala
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@ -1,4 +1,4 @@
package core package org.broadinstitute.sting.queue.qscripts
import org.broadinstitute.sting.queue.extensions.gatk._ import org.broadinstitute.sting.queue.extensions.gatk._
import org.broadinstitute.sting.queue.QScript import org.broadinstitute.sting.queue.QScript

2
public/scala/qscript/core/GATKResourcesBundle.scala → public/scala/qscript/org/broadinstitute/sting/queue/qscripts/GATKResourcesBundle.scala
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@ -1,4 +1,4 @@
package core package org.broadinstitute.sting.queue.qscripts
import org.broadinstitute.sting.queue.QScript import org.broadinstitute.sting.queue.QScript
import org.broadinstitute.sting.queue.extensions.gatk._ import org.broadinstitute.sting.queue.extensions.gatk._

2
public/scala/qscript/core/MethodsDevelopmentCallingPipeline.scala → public/scala/qscript/org/broadinstitute/sting/queue/qscripts/MethodsDevelopmentCallingPipeline.scala
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@ -1,3 +1,5 @@
package org.broadinstitute.sting.queue.qscripts
import org.broadinstitute.sting.commandline.Hidden import org.broadinstitute.sting.commandline.Hidden
import org.broadinstitute.sting.queue.extensions.gatk._ import org.broadinstitute.sting.queue.extensions.gatk._
import org.broadinstitute.sting.queue.QScript import org.broadinstitute.sting.queue.QScript

2
public/scala/qscript/core/RecalibrateBaseQualities.scala → public/scala/qscript/org/broadinstitute/sting/queue/qscripts/RecalibrateBaseQualities.scala
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@ -1,4 +1,4 @@
package core package org.broadinstitute.sting.queue.qscripts
import org.broadinstitute.sting.queue.QScript import org.broadinstitute.sting.queue.QScript
import org.broadinstitute.sting.queue.extensions.gatk._ import org.broadinstitute.sting.queue.extensions.gatk._

2
public/scala/qscript/core/StandardVariantEvaluation.scala → public/scala/qscript/org/broadinstitute/sting/queue/qscripts/StandardVariantEvaluation.scala
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@ -1,4 +1,4 @@
package core package org.broadinstitute.sting.queue.qscripts
import org.broadinstitute.sting.queue.QScript import org.broadinstitute.sting.queue.QScript
import org.broadinstitute.sting.queue.extensions.gatk.RodBind import org.broadinstitute.sting.queue.extensions.gatk.RodBind