diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/CreatePedFileWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/CreatePedFileWalker.java
index 7669d42f1..3d03e7c36 100644
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/CreatePedFileWalker.java
+++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/CreatePedFileWalker.java
@@ -209,8 +209,9 @@ public class CreatePedFileWalker extends ReadWalker<Integer, Integer> {
                 error = error + PrintGenotypes(s[1], HLA_DQB1_1,HLA_DQB1_2, HLA_DQB1_start,HLA_DQB1_end);
                 error = error + PrintGenotypes(s[1], HLA_DPA1_1,HLA_DPA1_2, HLA_DPA1_start,HLA_DPA1_end);
                 error = error + PrintGenotypes(s[1], HLA_DPB1_1,HLA_DPB1_2, HLA_DPB1_start,HLA_DPB1_end);
-                out.printf("%s",error);
+                
                 out.printf("\n");
+                out.printf("%s",error);
             }
         }