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Included HLA class 2 genes in CreatePedFileWalker 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1776 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
sjia 2009-10-07 18:46:51 +00:00
parent 8f896b734f
commit 5bdcc2b4dc
1 changed files with 2 additions and 1 deletions
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3
java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/CreatePedFileWalker.java
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@ -209,8 +209,9 @@ public class CreatePedFileWalker extends ReadWalker<Integer, Integer> {
error = error + PrintGenotypes(s[1], HLA_DQB1_1,HLA_DQB1_2, HLA_DQB1_start,HLA_DQB1_end);
error = error + PrintGenotypes(s[1], HLA_DPA1_1,HLA_DPA1_2, HLA_DPA1_start,HLA_DPA1_end);
error = error + PrintGenotypes(s[1], HLA_DPB1_1,HLA_DPB1_2, HLA_DPB1_start,HLA_DPB1_end);
out.printf("%s",error);
out.printf("\n");
out.printf("%s",error);
}
}