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Changing max coverage threshold 

Because Integer.maxValue is not unit testable
This commit is contained in:
Mauricio Carneiro 2013-09-20 18:54:01 -04:00
parent 175388de1d
commit 5bbad75402
1 changed files with 1 additions and 1 deletions
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protected/java/src/org/broadinstitute/sting/gatk/walkers/diagnostics/diagnosetargets/ThresHolder.java
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@ -77,7 +77,7 @@ final class ThresHolder {
* If at any locus, a sample has more coverage than this, it will be reported as EXCESSIVE_COVERAGE
*/
@Argument(fullName = "maximum_coverage", shortName = "max", doc = "The maximum allowable coverage, used for calling EXCESSIVE_COVERAGE", required = false)
public int maximumCoverage = Integer.MAX_VALUE;
public int maximumCoverage = Integer.MAX_VALUE / 2;
/**
* If any sample has a paired read whose distance between alignment starts (between the pairs) is greater than this, it will be reported as BAD_MATE