diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantDataManager.java b/java/src/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantDataManager.java index ac60c4b07..d4d76d370 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantDataManager.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantDataManager.java @@ -53,7 +53,7 @@ public class VariantDataManager { numVariants = dataList.size(); data = dataList.toArray( new VariantDatum[numVariants] ); if( numVariants <= 0 ) { - throw new StingException( "There are zero variants with > 0 clustering weight! Please provide training sets using the dbsnp, hapmap, or 1kg rod bindings. Clustering weights can be specified using -weightDBSNP, -weightHapMap, and -weight1KG" ); + throw new StingException( "There are zero variants with > 0 clustering weight! Please provide sets of known polymorphic loci to be used as training data using the dbsnp, hapmap, or 1kg rod bindings. Clustering weights can be specified using -weightDBSNP, -weightHapMap, and -weight1KG" ); } if( _annotationKeys == null ) { numAnnotations = 0;