diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/variantstovcf/SequenomToVCF.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/variantstovcf/PlinkToVCF.java
similarity index 99%
rename from java/src/org/broadinstitute/sting/playground/gatk/walkers/variantstovcf/SequenomToVCF.java
rename to java/src/org/broadinstitute/sting/playground/gatk/walkers/variantstovcf/PlinkToVCF.java
index 39c5ca1e1..b170a89ec 100644
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/variantstovcf/SequenomToVCF.java
+++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/variantstovcf/PlinkToVCF.java
@@ -21,7 +21,7 @@ import java.util.*;
 /**
  * Converts Sequenom files to a VCF annotated with QC metrics (HW-equilibrium, % failed probes)
  */
-public class SequenomToVCF extends RefWalker<VCFRecord,Integer> {
+public class PlinkToVCF extends RefWalker<VCFRecord,Integer> {
     @Argument(fullName="sequenomePedFile", shortName="sPed", doc="The sequenome file from which to generate a VCF", required=true)
     public File seqFile = null;
     @Argument(fullName="outputVCF", shortName="vcf", doc="The VCF file to write to", required=true)
diff --git a/java/test/org/broadinstitute/sting/playground/gatk/walkers/variantstovcf/SequenomToVCFIntegrationTest.java b/java/test/org/broadinstitute/sting/playground/gatk/walkers/variantstovcf/SequenomToVCFIntegrationTest.java
index 741b41b10..fe01586e8 100644
--- a/java/test/org/broadinstitute/sting/playground/gatk/walkers/variantstovcf/SequenomToVCFIntegrationTest.java
+++ b/java/test/org/broadinstitute/sting/playground/gatk/walkers/variantstovcf/SequenomToVCFIntegrationTest.java
@@ -20,7 +20,7 @@ public class SequenomToVCFIntegrationTest extends WalkerTest {
         String testMD5 = "a16ce402ce4492c8c0552073c0a8bdf5";
         String testPedFile = "/humgen/gsa-hpprojects/GATK/data/Validation_Data/Sequenom_Test_File.txt";
         String testArgs = "-R "+oneKGLocation+"reference/human_b36_both.fasta -L 1:1000000-2000000 "+
-                          "-T SequenomToVCF -b36contig -ns 10 -sPed "+testPedFile+" -vcf %s";
+                          "-T PlinkToVCF -b36contig -ns 10 -sPed "+testPedFile+" -vcf %s";
         WalkerTest.WalkerTestSpec spec = new WalkerTestSpec(testArgs,1, Arrays.asList(testMD5));
         List<File> result = executeTest("TestSequenomToVCFNoSmartHardy",spec).getFirst();
     }