From 5afeb465aa0a53a80f7490914e5c8c8a5f473db1 Mon Sep 17 00:00:00 2001
From: Joel Thibault <thibault@broadinstitute.org>
Date: Thu, 20 Dec 2012 09:52:37 -0500
Subject: [PATCH] TODOs

---
 .../sting/gatk/traversals/TraverseActiveRegionsTest.java       | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/public/java/test/org/broadinstitute/sting/gatk/traversals/TraverseActiveRegionsTest.java b/public/java/test/org/broadinstitute/sting/gatk/traversals/TraverseActiveRegionsTest.java
index 185eca85c..f276d21e5 100644
--- a/public/java/test/org/broadinstitute/sting/gatk/traversals/TraverseActiveRegionsTest.java
+++ b/public/java/test/org/broadinstitute/sting/gatk/traversals/TraverseActiveRegionsTest.java
@@ -117,7 +117,8 @@ public class TraverseActiveRegionsTest extends BaseTest {
         // TODO: reads which are partially between intervals (in/outside extension)
         // TODO: duplicate reads
 
-        // TODO: should we assign reads which are completely outside intervals but within extension?
+        // TODO: reads which are completely outside intervals but within extension
+        // TODO: test the extension itself
 
 
         intervals = new ArrayList<GenomeLoc>();