diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/indels/IndelRealignerPerformanceTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/indels/IndelRealignerPerformanceTest.java index f32a2b156..df90554a9 100755 --- a/java/test/org/broadinstitute/sting/gatk/walkers/indels/IndelRealignerPerformanceTest.java +++ b/java/test/org/broadinstitute/sting/gatk/walkers/indels/IndelRealignerPerformanceTest.java @@ -6,6 +6,21 @@ import org.testng.annotations.Test; import java.util.ArrayList; public class IndelRealignerPerformanceTest extends WalkerTest { + @Test + public void testHighCoverage() { + WalkerTestSpec spec = new WalkerTestSpec( + + "-R " + b36KGReference + + " -T IndelRealigner" + + " -I " + validationDataLocation + "indelRealignerTest.pilot1.veryHighCoverage.bam" + + " -L 20:49,500-55,500" + + " -o /dev/null" + + " -targetIntervals " + validationDataLocation + "indelRealignerTest.pilot1.ceu.intervals", + 0, + new ArrayList(0)); + executeTest("testIndelRealignerHighCoverage", spec); + } + @Test public void testRealigner() { WalkerTestSpec spec1 = new WalkerTestSpec(