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Changing hidden optimization argument to advanced.

This commit is contained in:
Ryan Poplin 2011-12-16 10:29:20 -05:00
parent 3642a73c07
commit 5aa79dacfc
1 changed files with 1 additions and 1 deletions
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public/java/src/org/broadinstitute/sting/gatk/walkers/variantrecalibration/VariantRecalibrator.java
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@ -175,7 +175,7 @@ public class VariantRecalibrator extends RodWalker<ExpandingArrayList<VariantDat
///////////////////////////// /////////////////////////////
// Debug Arguments // Debug Arguments
///////////////////////////// /////////////////////////////
@Hidden @Advanced
@Argument(fullName = "trustAllPolymorphic", shortName = "allPoly", doc = "Trust that all the input training sets' unfiltered records contain only polymorphic sites to drastically speed up the computation.", required = false) @Argument(fullName = "trustAllPolymorphic", shortName = "allPoly", doc = "Trust that all the input training sets' unfiltered records contain only polymorphic sites to drastically speed up the computation.", required = false)
protected Boolean TRUST_ALL_POLYMORPHIC = false; protected Boolean TRUST_ALL_POLYMORPHIC = false;
//@Hidden //@Hidden