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Going through the backlog of emergency hacks I put in for the 1000G release. It is possible to call a site in an analysis panel but when using all samples the site isn't called because of going over the minimum deletion threshold, for example. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5174 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
rpoplin 2011-02-02 15:12:26 +00:00
parent 7605f0e6c1
commit 5a8e2c2739
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UGCalcLikelihoods.java
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@ -111,7 +111,7 @@ public class UGCalcLikelihoods extends LocusWalker<VariantCallContext, Integer>
} }
public Integer reduce(VariantCallContext value, Integer sum) { public Integer reduce(VariantCallContext value, Integer sum) {
if ( value == null ) if ( value == null || value.vc == null )
return sum; return sum;
try { try {