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Revert "Update HaplotypeCaller and VariantAnnotator test MD5s" 

This reverts commit 7faa44d576b06d7aef29562e82590a7855f216f4.
This commit is contained in:
David Roazen 2014-03-10 14:06:51 -04:00
parent e7d6db033b
commit 5a6aa54673
3 changed files with 3 additions and 3 deletions
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2
protected/gatk-protected/src/test/java/org/broadinstitute/sting/gatk/walkers/annotator/VariantAnnotatorIntegrationTest.java
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@ -358,7 +358,7 @@ public class VariantAnnotatorIntegrationTest extends WalkerTest {
final File outputVCFNoQD = executeTest("testQualByDepth calling without QD", specNoQD).getFirst().get(0);
final String baseAnn = String.format("-T VariantAnnotator -R %s -V %s", REF, outputVCFNoQD.getAbsolutePath()) + " --no_cmdline_in_header -o %s -L 20:10130000-10134800 -A QualByDepth";
final WalkerTestSpec specAnn = new WalkerTestSpec(baseAnn, 1, Arrays.asList("d9304563b1152a6eee6221a016692cf9"));
final WalkerTestSpec specAnn = new WalkerTestSpec(baseAnn, 1, Arrays.asList("388200d107fb47326df78a971a52698f"));
specAnn.disableShadowBCF();
final File outputVCFAnn = executeTest("testQualByDepth re-annotation of QD", specAnn).getFirst().get(0);

2
protected/gatk-protected/src/test/java/org/broadinstitute/sting/gatk/walkers/haplotypecaller/HaplotypeCallerComplexAndSymbolicVariantsIntegrationTest.java
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@ -64,7 +64,7 @@ public class HaplotypeCallerComplexAndSymbolicVariantsIntegrationTest extends Wa
@Test
public void testHaplotypeCallerMultiSampleComplex1() {
HCTestComplexVariants(privateTestDir + "AFR.complex.variants.bam", "", "6764931523daf1bce11ee0349e434945");
HCTestComplexVariants(privateTestDir + "AFR.complex.variants.bam", "", "7278afd47e5851c954359441cac2f0b8");
}
private void HCTestSymbolicVariants(String bam, String args, String md5) {

2
protected/gatk-protected/src/test/java/org/broadinstitute/sting/gatk/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java
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@ -284,7 +284,7 @@ public class HaplotypeCallerIntegrationTest extends WalkerTest {
public void HCTestConservativePcrIndelModelWGS() {
WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec(
"-T HaplotypeCaller --disableDithering --pcr_indel_model CONSERVATIVE -R " + b37KGReference + " --no_cmdline_in_header -I " + NA12878_BAM + " -o %s -L 20:10,000,000-10,300,000", 1,
Arrays.asList("ab89ca9309269cd6bb89a4f78e4d119f"));
Arrays.asList("dcb38cb9280f2c3059a09d323db1c633"));
executeTest("HC calling with conservative indel error modeling on WGS intervals", spec);
}