diff --git a/public/scala/src/org/broadinstitute/sting/queue/extensions/gatk/VcfGatherFunction.scala b/public/scala/src/org/broadinstitute/sting/queue/extensions/gatk/VcfGatherFunction.scala index fcb3e690a..f8a6cb2cb 100644 --- a/public/scala/src/org/broadinstitute/sting/queue/extensions/gatk/VcfGatherFunction.scala +++ b/public/scala/src/org/broadinstitute/sting/queue/extensions/gatk/VcfGatherFunction.scala @@ -43,7 +43,7 @@ class VcfGatherFunction extends CombineVariants with GatherFunction { this.intervals = this.originalGATK.intervals this.intervalsString = this.originalGATK.intervalsString - this.variants = this.gatherParts.zipWithIndex map { case (input, index) => new TaggedFile(input, "input"+index) } + this.variant = this.gatherParts.zipWithIndex map { case (input, index) => new TaggedFile(input, "input"+index) } this.rod_priority_list = (0 until this.gatherParts.size).map("input"+_).mkString(",") this.out = this.originalOutput this.assumeIdenticalSamples = true