From 5a1a3fc79a2f9ff00e9fcd62b559e681eb9e1238 Mon Sep 17 00:00:00 2001
From: ebanks <ebanks@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Sun, 18 Jul 2010 20:21:01 +0000
Subject: [PATCH] Fix bad VariantContext creation in unit test

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3824 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/utils/genotype/vcf/VCFWriterUnitTest.java            | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/java/test/org/broadinstitute/sting/utils/genotype/vcf/VCFWriterUnitTest.java b/java/test/org/broadinstitute/sting/utils/genotype/vcf/VCFWriterUnitTest.java
index a6224974c..0e9bf30ed 100644
--- a/java/test/org/broadinstitute/sting/utils/genotype/vcf/VCFWriterUnitTest.java
+++ b/java/test/org/broadinstitute/sting/utils/genotype/vcf/VCFWriterUnitTest.java
@@ -112,9 +112,8 @@ public class VCFWriterUnitTest extends BaseTest {
         Map<String, String> attributes = new HashMap<String,String>();
         Map<String, Genotype> genotypes = new HashMap<String,Genotype>();
 
-        alleles.add(Allele.create("A",true));
+        alleles.add(Allele.create("-",true));
         alleles.add(Allele.create("CC",false));
-        alleles.add(Allele.create("-",false));
 
         attributes.put("DP","50");
         for (String name : header.getGenotypeSamples()) {