diff --git a/java/test/org/broadinstitute/sting/utils/genotype/vcf/VCFWriterUnitTest.java b/java/test/org/broadinstitute/sting/utils/genotype/vcf/VCFWriterUnitTest.java index a6224974c..0e9bf30ed 100644 --- a/java/test/org/broadinstitute/sting/utils/genotype/vcf/VCFWriterUnitTest.java +++ b/java/test/org/broadinstitute/sting/utils/genotype/vcf/VCFWriterUnitTest.java @@ -112,9 +112,8 @@ public class VCFWriterUnitTest extends BaseTest { Map attributes = new HashMap(); Map genotypes = new HashMap(); - alleles.add(Allele.create("A",true)); + alleles.add(Allele.create("-",true)); alleles.add(Allele.create("CC",false)); - alleles.add(Allele.create("-",false)); attributes.put("DP","50"); for (String name : header.getGenotypeSamples()) {