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Corrected bug causing getChildrenWithParents() to not take the last family member into consideration.

This commit is contained in:
Laurent Francioli 2011-12-09 14:51:34 +01:00
parent 1d5d200790
commit 5a06170804
1 changed files with 3 additions and 1 deletions
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4
public/java/src/org/broadinstitute/sting/gatk/samples/SampleDB.java
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@ -200,7 +200,9 @@ public class SampleDB {
continue;
sampleIterator = familyMembers.iterator();
for(Sample sample = sampleIterator.next(); sampleIterator.hasNext(); sample = sampleIterator.next()){
Sample sample;
while(sampleIterator.hasNext()){
sample = sampleIterator.next();
if(sample.getParents().size() == 2 && familyMembers.containsAll(sample.getParents()))
childrenWithParents.add(sample);
}